A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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27 lines
1000 B

2 years ago
@<TRIPOS>MOLECULE
URA
8 7 1 0 0
SMALL
bcc
@<TRIPOS>ATOM
1 C 1.0220 0.0700 0.0680 c2 1 URA 0.353000
2 O 0.4170 0.9650 -0.4760 o 1 URA -0.400000
3 N 0.3980 -0.9670 0.6980 n 1 URA -0.402000
4 N1 2.3850 0.0130 0.1020 n 1 URA -0.402000
5 H -0.6050 -0.9760 0.7030 hn 1 URA 0.212500
6 H1 0.8930 -1.7120 1.1500 hn 1 URA 0.212500
7 H2 2.8960 0.7510 -0.3460 hn 1 URA 0.212500
8 H3 2.8920 -0.7260 0.5510 hn 1 URA 0.212500
@<TRIPOS>BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 3 5 1
5 3 6 1
6 4 7 1
7 4 8 1
@<TRIPOS>SUBSTRUCTURE
1 URA 1 TEMP 0 **** **** 0 ROOT