A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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120 lines
4.4 KiB

2 years ago
$orca_opt_file
$trust
0.300000000000
$epredict
0.000000000000
$ediffsc
1000.000000000000
$ctyp
3
$coordinates
4 9
1.98799189 0.00088817 0.18438058 4.24999408 0.00088817 0.18438058
6.51199626 0.00088817 0.18438058
2.04568896 0.00088817 0.18438058 4.24999407 0.00088817 0.18438058
6.45429920 0.00088817 0.18438058
2.05236544 0.00088817 0.18438058 4.24999403 0.00088817 0.18438057
6.44762275 0.00088817 0.18438058
2.05162112 0.00088817 0.18438058 4.24999366 0.00088817 0.18438057
6.44836745 0.00088817 0.18438058
# redundant internal coordinates
# nbonds nangles ndihedrals nimpropers ncartesians
# bond definitions A B
# angle definitions A B C
# dihedral definitions A B C D
# improper torsion definitions A B C D
# cartesian definitions A x/y/z
$redundant_internals
2 2 0 0 0
1 0 0
2 1 0
0 1 2 -8 0
0 1 2 -4 0
$energies
4
-188.3560728084584639
-188.3604090030537179
-188.3604497811382998
-188.3604503522372795
$gradients
4 9
-0.0660464538439282 0.0000000053304393 0.0000000001716335 0.0000000128165979
0.0000000022640539 0.0000000026807788 0.0660464549296912 -0.0000000161230601
-0.0000000078716251
-0.0068505804958569 0.0000000053495906 -0.0000000149072329 0.0000001199697298
-0.0000000003533555 -0.0000000010682996 0.0068504632637335 0.0000000035999274
0.0000000055705466
0.0008590760165977 0.0000000043006531 -0.0000000143543937 0.0000014546664970
0.0000000003891685 -0.0000000038394442 -0.0008605282115356 0.0000000010853741
0.0000000041938126
-0.0000082136982629 0.0000000047182270 -0.0000000144218323 -0.0000011585474631
0.0000000026750576 -0.0000000057815938 0.0000093738124540 0.0000000018118397
0.0000000052452088
$redundant_coords
4 4
2.2620021823037382 2.2620021823037373 3.1415926535897931 3.1415926535897931
2.2043051168065126 2.2043051239545850 3.1415926535897931 3.1415926535897931
2.1976285904240038 2.1976287143764415 3.1415926535897931 3.1415926535897931
2.1983725358524921 2.1983737944425048 3.1415926535897931 3.1415926535897931
$redundant_gradients
4 4
0.0660464584780485 0.0660464502955709 0.0000000025534548 -0.0000000021769249
0.0068505814083924 0.0068504623511980 -0.0000000015947643 -0.0000000012124678
-0.0008590751927447 -0.0008605290353886 -0.0000000007682665 -0.0000000004112485
0.0000082142205056 0.0000093732902113 -0.0000000001966618 0.0000000003977327
$hessian_approx
9 9
0 1 2 3 4 5
0 1.150980 -0.000000 0.000000 -1.136192 -0.000002 0.000001
1 -0.000000 0.535644 -0.000000 -0.000000 -1.071288 -0.000000
2 0.000000 -0.000000 0.535644 0.000000 -0.000000 -1.071288
3 -1.136192 -0.000000 0.000000 2.274183 -0.000000 0.000000
4 -0.000002 -1.071288 -0.000000 -0.000000 2.142575 -0.000000
5 0.000001 -0.000000 -1.071288 0.000000 -0.000000 2.142575
6 -0.014788 0.000000 -0.000000 -1.137992 0.000002 -0.000001
7 -0.000000 0.535644 -0.000000 -0.000000 -1.071288 -0.000000
8 -0.000001 0.000000 0.535644 -0.000000 0.000000 -1.071288
6 7 8
0 -0.014788 -0.000000 -0.000001
1 0.000000 0.535644 0.000000
2 -0.000000 -0.000000 0.535644
3 -1.137992 -0.000000 -0.000000
4 0.000002 -1.071288 0.000000
5 -0.000001 -0.000000 -1.071288
6 1.152778 0.000000 0.000001
7 0.000000 0.535644 0.000000
8 0.000001 0.000000 0.535644
$bmatrix
4 9
0 1 2 3 4 5
0 -1.000000 -0.000000 0.000000 1.000000 0.000000 -0.000000
1 0.000000 0.000000 0.000000 -1.000000 0.000000 -0.000000
2 0.000000 -1.000000 0.000000 -0.000000 2.000000 -0.000000
3 0.000000 -0.000000 1.000000 -0.000000 0.000000 -2.000000
6 7 8
0 0.000000 0.000000 0.000000
1 1.000000 -0.000000 0.000000
2 -0.000000 -1.000000 0.000000
3 -0.000000 0.000000 1.000000