A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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# This file was created Tue Jun 7 16:54:27 2022
# Created by:
# :-) GROMACS - gmx msd, 2020.6-Debian-2020.6-2 (-:
#
# Executable: /usr/bin/gmx
# Data prefix: /usr
# Working dir: /home/student/adit/CMMDE_launching/larutan/SistemLarutan
# Command line:
# gmx msd -f nvep.trr -s nvep.tpr -n SLV.ndx -o msd_SLV.xvg
# gmx msd is part of G R O M A C S:
#
# Getting the Right Output Means no Artefacts in Calculating Stuff
#
@ title "Mean Square Displacement"
@ xaxis label "Time (ps)"
@ yaxis label "MSD (nm\S2\N)"
@TYPE xy
# MSD gathered over 5 ps with 1 restarts
# Diffusion constants fitted from time 0.5 to 4.5 ps
# D[(resname_SLV)] = 38.7058 (+/- 8.3051) (1e-5 cm^2/s)
0 0
0.25 0.0192117
0.5 0.0592023
0.75 0.102799
1 0.139409
1.25 0.187909
1.5 0.247107
1.75 0.312685
2 0.376386
2.25 0.420213
2.5 0.460079
2.75 0.512237
3 0.591065
3.25 0.660409
3.5 0.727847
3.75 0.792531
4 0.854195
4.25 0.908487
4.5 0.9653
4.75 1.00313
5 1.06781