A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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117 lines
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2 years ago
$orca_hessian_file
$act_atom
0
$act_coord
0
$act_energy
-5.070124
$hessian
9
0 1 2 3 4
0 5.0153331710E-01 -5.3060722768E-02 -4.1491079430E-02 -4.3244534659E-01 -4.0084092878E-02
1 -5.3060722768E-02 2.8650738494E-01 2.1405136245E-01 -8.0486957880E-03 -3.0519687256E-02
2 -4.1491079430E-02 2.1405136245E-01 1.8013792250E-01 -6.2920646425E-03 -1.8871513419E-02
3 -4.3244534659E-01 -8.0486957880E-03 -6.2920646425E-03 4.5189264359E-01 3.9039242588E-03
4 -4.0084092878E-02 -3.0519687256E-02 -1.8871513419E-02 3.9039242588E-03 3.0226919572E-02
5 -3.1341920012E-02 -1.8871689535E-02 -2.1141829960E-02 3.0510466469E-03 2.0971324760E-02
6 -6.9088148033E-02 6.1109394648E-02 4.7783125377E-02 -1.9447166108E-02 3.6180182740E-02
7 9.3144650593E-02 -2.5598799181E-01 -1.9517992292E-01 4.1448060830E-03 2.9290278726E-04
8 7.2832797380E-02 -1.9517987280E-01 -1.5899626281E-01 3.2410666038E-03 -2.0996758124E-03
5 6 7 8
0 -3.1341920012E-02 -6.9088148033E-02 9.3144650593E-02 7.2832797380E-02
1 -1.8871689535E-02 6.1109394648E-02 -2.5598799181E-01 -1.9517987280E-01
2 -2.1141829960E-02 4.7783125377E-02 -1.9517992292E-01 -1.5899626281E-01
3 3.0510466469E-03 -1.9447166108E-02 4.1448060830E-03 3.2410666038E-03
4 2.0971324760E-02 3.6180182740E-02 2.9290278726E-04 -2.0996758124E-03
5 1.9805805652E-02 2.8290884407E-02 -2.0995584766E-03 1.3360988061E-03
6 2.8290884407E-02 8.8535360763E-02 -9.7289446888E-02 -7.6073856331E-02
7 -2.0995584766E-03 -9.7289446888E-02 2.5569524804E-01 1.9727954575E-01
8 1.3360988061E-03 -7.6073856331E-02 1.9727954575E-01 1.5766025977E-01
$vibrational_frequencies
9
0 0.000000
1 0.000000
2 0.000000
3 0.000000
4 0.000000
5 0.000000
6 1591.021914
7 3532.222317
8 3553.964928
$normal_modes
9 9
0 1 2 3 4
0 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
1 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
2 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
3 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
4 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
5 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
6 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
7 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
8 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
5 6 7 8
0 0.0000000000E+00 4.0721137498E-02 -5.6762076790E-02 -2.9045170495E-02
1 0.0000000000E+00 4.5365698453E-02 3.1729345277E-02 -3.2146768540E-02
2 0.0000000000E+00 3.5473218659E-02 2.4810723522E-02 -2.5136818297E-02
3 0.0000000000E+00 2.7274520573E-02 7.0266957076E-01 7.0767482621E-01
4 0.0000000000E+00 -5.5522727783E-01 3.0998203060E-02 -9.7397068783E-03
5 0.0000000000E+00 -4.3415585773E-01 2.4236302572E-02 -7.6184151067E-03
6 0.0000000000E+00 -6.7360138449E-01 1.9825946352E-01 -2.4666918856E-01
7 0.0000000000E+00 -1.6481816815E-01 -5.3460712676E-01 5.1997398255E-01
8 0.0000000000E+00 -1.2887591343E-01 -4.1803269704E-01 4.0659059361E-01
#
# The atoms: label mass x y z (in bohrs)
#
$atoms
3
O 15.99900 1.746377337196 0.098676688290 -0.099731938722
H 1.00800 3.570755883853 0.178916624800 -0.036995438538
H 1.00800 1.234282723597 1.480400012035 0.980697965930
$actual_temperature
0.000000
$frequency_scale_factor
1.000000
$dipole_derivatives
9
-4.0000000000E-01 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 -6.0000000000E-01 2.0000000000E-01
0.0000000000E+00 2.0000000000E-01 -6.0000000000E-01
1.0000000000E-01 0.0000000000E+00 0.0000000000E+00
-1.0000000000E-01 4.0000000000E-01 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 4.0000000000E-01
3.0000000000E-01 0.0000000000E+00 0.0000000000E+00
1.0000000000E-01 2.0000000000E-01 -2.0000000000E-01
1.0000000000E-01 -2.0000000000E-01 3.0000000000E-01
#
# The IR spectrum
# wavenumber eps Int TX TY TZ
#
$ir_spectrum
9
0.00 0.00000000 0.00000000 0.000000 0.000000 0.000000
0.00 0.00000000 0.00000000 0.000000 0.000000 0.000000
0.00 0.00000000 0.00000000 0.000000 0.000000 0.000000
0.00 0.00000000 0.00000000 0.000000 0.000000 0.000000
0.00 0.00000000 0.00000000 0.000000 0.000000 0.000000
0.00 0.00000000 0.00000000 0.000000 0.000000 0.000000
1591.02 0.02402202 121.39743181 -0.035425 -0.046627 -0.035815
3532.22 0.00068734 3.47355421 0.006792 -0.003138 -0.002177
3553.96 0.00222411 11.23974807 0.012984 0.004205 0.003002
$end