A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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298 lines
7.9 KiB

#
# Number of atoms
#
71
#
# The current total energy in Eh
#
-106.584609849900
#
# The current gradient in Eh/bohr
#
0.000012434938
0.000003391057
-0.000003321356
-0.000008112395
-0.000019366935
-0.000007027411
0.000007702114
0.000028151841
-0.000027730849
0.000020687858
0.000008675811
-0.000005742211
-0.000003903790
-0.000048421805
0.000047709565
0.000048246564
-0.000061127583
-0.000026271659
-0.000053925571
0.000001575583
-0.000028196995
0.000031648291
0.000032801706
0.000033036343
0.000004141107
-0.000007283302
-0.000038075314
-0.000021083590
-0.000005497721
0.000049420434
-0.000017643399
-0.000038472445
-0.000054995889
0.000018370442
0.000096795823
0.000120899036
0.000044028453
-0.000126763553
-0.000194650689
0.000053839849
0.000205225883
0.000002118298
0.000018980627
-0.000128205259
-0.000007485304
-0.000021195777
0.000034682283
0.000015893514
-0.000023781656
-0.000012719725
-0.000011931615
0.000033871956
0.000011669556
0.000000386219
-0.000002368742
-0.000015009876
-0.000017593337
-0.000005979656
-0.000000847897
-0.000009767010
0.000008394600
0.000005492788
0.000014347190
-0.000014986012
-0.000011121906
-0.000020725502
0.000028144657
0.000005693398
0.000007215545
-0.000001836192
-0.000004941521
0.000004275985
-0.000012167056
-0.000002000396
0.000003681707
0.000028555709
0.000004748171
0.000002822717
-0.000014198526
-0.000000946476
-0.000012165884
-0.000009099833
-0.000011377097
0.000013512852
0.000017045835
0.000008970975
0.000028257524
-0.000004051596
0.000008277547
-0.000026984700
-0.000009038531
0.000010110245
0.000000197894
0.000020728949
0.000016549328
-0.000025451848
-0.000025549662
0.000004278239
0.000057828924
0.000004777463
-0.000006121602
-0.000044295569
-0.000055432087
-0.000030842844
0.000040500942
0.000104267579
0.000029917255
-0.000020155499
0.000004952904
0.000003744939
-0.000009932713
-0.000045941580
0.000017547022
-0.000042417750
0.000013701618
0.000028931679
0.000006626910
-0.000004777434
-0.000018973001
0.000006815630
-0.000012566777
0.000003961274
-0.000000290495
0.000023762434
-0.000000680331
0.000012167392
-0.000021489741
-0.000005129746
-0.000003186058
-0.000001420915
-0.000000183604
-0.000000379390
0.000001455137
-0.000006116840
0.000000234290
-0.000007236940
-0.000008772200
0.000030181576
0.000000661606
0.000021309682
0.000010348427
-0.000017662625
-0.000006468910
0.000000526887
0.000007442540
0.000009541652
-0.000020497364
-0.000006940906
0.000007347513
-0.000012573760
-0.000009734241
0.000014933254
0.000038977278
-0.000026645418
0.000000488223
-0.000012232614
0.000011965820
-0.000004627710
-0.000002394198
-0.000010603484
0.000007846102
-0.000009920215
-0.000016237820
-0.000014228781
0.000004245497
-0.000001564989
-0.000012650798
-0.000041025624
-0.000025167468
0.000006722300
0.000046596824
-0.000019310143
0.000029395265
0.000045374628
-0.000025632836
-0.000033267220
0.000011713308
-0.000002140626
-0.000025639450
0.000059997407
0.000009319352
-0.000017151742
0.000000217840
0.000007257631
0.000003887648
-0.000004172665
-0.000000782613
0.000005493576
0.000001443301
-0.000003562666
-0.000002247086
0.000006128976
-0.000007962565
-0.000008306052
0.000009109571
0.000007573836
0.000011780771
0.000003616352
0.000003652743
0.000002111423
0.000002437966
-0.000005402791
0.000000266564
-0.000000670810
-0.000008506876
-0.000000943392
0.000000110232
0.000001979165
0.000002851888
0.000004688478
-0.000013946253
0.000001286540
-0.000001401167
#
# The atomic numbers and current coordinates in Bohr
#
6 11.2976954 -5.0017672 8.4371308
6 11.0509311 -4.0792889 6.1090126
6 13.1540058 -2.6430107 4.8625477
6 13.1597995 -2.8777150 1.9936868
6 15.1546219 -1.1263409 0.8637619
6 17.6203873 -1.0170415 2.3000566
6 19.6564325 0.2491804 1.2241563
6 19.3913950 1.5060812 -1.3092213
6 21.2541549 3.6794332 -1.5635075
6 23.9337083 2.7129031 -1.1910463
6 24.2045614 1.4245254 1.3293362
6 26.5115020 1.2866485 2.5048470
6 28.8489214 2.3977280 1.3144035
6 31.2520199 1.0766343 2.1982040
6 31.3449754 0.9087994 5.0205233
6 33.5472880 1.1850790 6.3640989
6 33.5637083 0.9112333 8.9901628
6 31.4207001 0.1818695 10.2586412
6 31.3458939 -0.0462455 13.0844216
6 29.6808842 -2.2555045 13.8892542
6 27.1271596 -2.1300246 12.6595943
6 25.0168125 -2.9903880 13.8426831
6 22.6404610 -3.1071390 12.5965218
6 20.4742185 -3.9238279 13.8245708
6 18.1716319 -4.1394626 12.5523201
6 15.9418606 -4.9688687 13.7721626
6 13.7360138 -5.2207298 12.4684839
6 13.6244071 -4.6908479 9.8573353
6 15.7769574 -3.8755586 8.6190088
6 18.0646532 -3.5590489 9.9264230
6 20.2407107 -2.6461696 8.6668692
6 20.0799929 -1.8191309 6.0801622
6 17.8425748 -2.0751015 4.7116232
6 15.7113081 -3.6024583 5.7981547
6 22.2124751 -0.6888503 4.9315975
6 22.0130884 0.3363498 2.4696658
6 24.5556623 -0.6063741 6.2267317
6 26.7219958 0.2671703 4.9788244
6 29.0871413 0.3008503 6.2918244
6 29.1697686 -0.2476772 8.8963453
6 26.9775884 -1.2326491 10.1232524
6 24.7063874 -1.4311708 8.7885134
6 22.5113334 -2.3977291 9.9982805
1 9.7544856 -5.9693088 9.3617779
1 9.2937198 -4.2368022 5.0804643
1 12.9540855 -0.6329911 5.3637331
1 11.3092812 -2.3929766 1.2167501
1 13.5614090 -4.8376943 1.4810634
1 14.3795316 0.7942325 0.8073748
1 15.5208897 -1.6953762 -1.0872227
1 17.4763398 2.2249853 -1.5583675
1 19.7377362 0.1183421 -2.8070845
1 21.0684044 4.5652009 -3.4182204
1 20.8372925 5.1036746 -0.1277104
1 24.3986179 1.3752891 -2.7023864
1 25.2451783 4.2975782 -1.3228111
1 28.9498742 4.4037633 1.8249291
1 28.7473058 2.2707274 -0.7395327
1 31.2780246 -0.8490839 1.4348896
1 32.9135704 2.0609555 1.4716791
1 35.2831294 1.6431850 5.3896627
1 35.2927237 1.2488418 10.0242375
1 30.5604894 1.7082233 13.8570036
1 33.2523021 -0.2666997 13.8417996
1 30.5846345 -4.0249842 13.3013778
1 29.4863693 -2.3052609 15.9426435
1 25.1198110 -3.6551926 15.7728153
1 20.5674127 -4.4160414 15.8055454
1 16.0297784 -5.4105727 15.7642288
1 12.0384136 -5.8504567 13.4144756
1 15.9384454 -5.5454457 5.0555804