A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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298 lines
7.9 KiB

#
# Number of atoms
#
71
#
# The current total energy in Eh
#
-106.196831730670
#
# The current gradient in Eh/bohr
#
0.000674227956
0.000680444598
-0.000621186098
0.001616919200
0.000452590030
0.001106420163
-0.000331875650
-0.003766368988
-0.000920006064
0.000552182022
0.001510645235
0.001497012134
0.001155354300
-0.001532226013
0.000984783012
-0.000568179895
-0.000046601034
-0.000517010439
-0.000061055401
0.000795138662
-0.001331170225
0.000264848844
0.001060222727
0.002361365830
0.000692250217
-0.002344109916
-0.000208407174
-0.000841845562
0.000888569825
0.002135620281
-0.000492952695
0.000622951310
-0.000916780243
0.000890703542
0.000543161148
-0.000353464846
-0.000629810546
-0.002423559792
0.000239437400
-0.001383784608
0.001029843702
0.002088063072
0.001297200269
0.000232855919
-0.001369415920
-0.001538861413
-0.000406800302
0.001953764316
-0.001423170738
-0.000299736581
-0.002010535112
0.001221807696
0.000320479951
0.001462345388
-0.000573103651
-0.001567618653
-0.001919534563
-0.001275903593
0.001911570932
-0.001203076478
0.000852740021
-0.000809414147
0.002033476622
-0.000840225924
0.000711748649
-0.002846580877
0.000327778682
-0.000483676034
0.001697544033
-0.000329215074
0.000453413512
-0.002234600124
0.000039347681
-0.000373354707
0.001630186534
-0.000554000242
0.000240485021
-0.001568734425
0.001591999708
0.000304688525
-0.000271873765
-0.001147353652
-0.000114076198
0.000329494468
0.000666711916
0.000260413582
-0.001310991848
-0.000272557884
-0.000201021748
0.000219282328
-0.000185675804
0.000201365226
-0.000355359878
0.000469259216
0.000236371437
-0.000094750991
-0.000670098056
-0.000382643905
0.000653453990
-0.000106180509
0.002808074660
0.001252724466
0.000241209149
-0.000002837353
0.000305548635
0.000267522340
-0.000010442664
0.000150849711
-0.000487198141
-0.000251280421
0.000280259036
0.000258960633
0.000378830486
-0.000158373267
0.000176347289
0.000140295005
-0.000116005045
0.000215869330
0.000011474622
0.000098099163
0.000110930373
-0.000185380719
0.000283172717
-0.000435356264
0.000093839187
-0.000370892491
0.000168091211
0.000138285114
-0.000185785903
0.002481785016
0.001203829079
-0.001062727571
0.002480644873
0.000269609705
0.001509367765
0.000394551009
-0.001109718451
-0.000040711253
0.000774378703
-0.000617269228
0.000317011161
-0.000120474272
0.001477502339
0.000894005337
0.000654745008
-0.000639647752
0.000706281819
0.000319539640
0.000553662910
0.001229862639
0.001511780954
-0.000871744005
0.000565687802
0.000300550028
0.000524559535
0.001041233511
-0.000005920964
-0.000019088603
0.001079955000
0.000489413086
-0.001626088079
-0.000745379269
-0.000667113572
0.000127697979
0.000996572235
-0.000910573302
-0.001313144674
0.000644173881
-0.000338135533
-0.000904375066
0.000659953845
-0.000348241768
-0.000150943133
0.001548975949
-0.000457891780
0.000640386799
0.000764492375
-0.000608245787
-0.000863288259
0.000964407254
-0.002625852378
-0.000664439863
0.000984196489
-0.002623847741
-0.000550082411
-0.001080096568
-0.000183001346
-0.000726152499
-0.000721430853
-0.000907216317
0.000545642701
-0.000946654513
-0.000531366740
0.000807431985
-0.000409195783
-0.000478822589
-0.000326310394
-0.001325318294
-0.000182611548
0.001001948384
-0.002754299389
-0.000115345797
0.000694234257
-0.002772804129
0.000229660758
0.000697944269
-0.002825157839
0.002164757283
0.000898137312
-0.001549300120
-0.000301001215
0.000113095273
0.000448530991
#
# The atomic numbers and current coordinates in Bohr
#
6 11.2976954 -5.0017672 8.4371308
6 11.0509311 -4.0792889 6.1090126
6 13.1540058 -2.6430107 4.8625477
6 13.1597995 -2.8777150 1.9936868
6 15.1546219 -1.1263409 0.8637619
6 17.6203873 -1.0170415 2.3000566
6 19.6564325 0.2491804 1.2241563
6 19.3913950 1.5060812 -1.3092213
6 21.2541549 3.6794332 -1.5635075
6 23.9337083 2.7129031 -1.1910463
6 24.2045614 1.4245254 1.3293362
6 26.5115020 1.2866485 2.5048470
6 28.8489214 2.3977280 1.3144035
6 31.2520199 1.0766343 2.1982040
6 31.3449754 0.9087994 5.0205233
6 33.5472880 1.1850790 6.3640989
6 33.5637083 0.9112333 8.9901628
6 31.4207001 0.1818695 10.2586412
6 31.3458939 -0.0462455 13.0844216
6 29.6808842 -2.2555045 13.8892542
6 27.1271596 -2.1300246 12.6595943
6 25.0168125 -2.9903880 13.8426831
6 22.6404610 -3.1071390 12.5965218
6 20.4742185 -3.9238279 13.8245708
6 18.1716319 -4.1394626 12.5523201
6 15.9418606 -4.9688687 13.7721626
6 13.7360138 -5.2207298 12.4684839
6 13.6244071 -4.6908479 9.8573353
6 15.7769574 -3.8755586 8.6190088
6 18.0646532 -3.5590489 9.9264230
6 20.2407107 -2.6461696 8.6668692
6 20.0799929 -1.8191309 6.0801622
6 17.8425748 -2.0751015 4.7116232
6 15.7113081 -3.6024583 5.7981547
6 22.2124751 -0.6888503 4.9315975
6 22.0130884 0.3363498 2.4696658
6 24.5556623 -0.6063741 6.2267317
6 26.7219958 0.2671703 4.9788244
6 29.0871413 0.3008503 6.2918244
6 29.1697686 -0.2476772 8.8963453
6 26.9775884 -1.2326491 10.1232524
6 24.7063874 -1.4311708 8.7885134
6 22.5113334 -2.3977291 9.9982805
1 9.7544856 -5.9693088 9.3617779
1 9.2937198 -4.2368022 5.0804643
1 12.9540855 -0.6329911 5.3637331
1 11.3092812 -2.3929766 1.2167501
1 13.5614090 -4.8376943 1.4810634
1 14.3795316 0.7942325 0.8073748
1 15.5208897 -1.6953762 -1.0872227
1 17.4763398 2.2249853 -1.5583675
1 19.7377362 0.1183421 -2.8070845
1 21.0684044 4.5652009 -3.4182204
1 20.8372925 5.1036746 -0.1277104
1 24.3986179 1.3752891 -2.7023864
1 25.2451783 4.2975782 -1.3228111
1 28.9498742 4.4037633 1.8249291
1 28.7473058 2.2707274 -0.7395327
1 31.2780246 -0.8490839 1.4348896
1 32.9135704 2.0609555 1.4716791
1 35.2831294 1.6431850 5.3896627
1 35.2927237 1.2488418 10.0242375
1 30.5604894 1.7082233 13.8570036
1 33.2523021 -0.2666997 13.8417996
1 30.5846345 -4.0249842 13.3013778
1 29.4863693 -2.3052609 15.9426435
1 25.1198110 -3.6551926 15.7728153
1 20.5674127 -4.4160414 15.8055454
1 16.0297784 -5.4105727 15.7642288
1 12.0384136 -5.8504567 13.4144756
1 15.9384454 -5.5454457 5.0555804