A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
 
 
 

41 lines
1.2 KiB

# This file was created Tue Jun 7 16:54:27 2022
# Created by:
# :-) GROMACS - gmx msd, 2020.6-Debian-2020.6-2 (-:
#
# Executable: /usr/bin/gmx
# Data prefix: /usr
# Working dir: /home/student/adit/CMMDE_launching/larutan/SistemLarutan
# Command line:
# gmx msd -f nvep.trr -s nvep.tpr -n AMK.ndx -o msd_AMK.xvg
# gmx msd is part of G R O M A C S:
#
# Getting the Right Output Means no Artefacts in Calculating Stuff
#
@ title "Mean Square Displacement"
@ xaxis label "Time (ps)"
@ yaxis label "MSD (nm\S2\N)"
@TYPE xy
# MSD gathered over 5 ps with 1 restarts
# Diffusion constants fitted from time 0.5 to 4.5 ps
# D[(resname_AMK)] = 32.8258 (+/- 44.3559) (1e-5 cm^2/s)
0 0
0.25 0.0182079
0.5 0.0447634
0.75 0.0938226
1 0.186926
1.25 0.290412
1.5 0.380256
1.75 0.482862
2 0.548567
2.25 0.545967
2.5 0.594994
2.75 0.722441
3 0.823862
3.25 0.799209
3.5 0.771951
3.75 0.776383
4 0.752131
4.25 0.765308
4.5 0.835394
4.75 0.947002
5 1.03603