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37 lines
1.4 KiB
37 lines
1.4 KiB
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title = NVE Production |
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; Run parameters |
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integrator = md ; leap-frog integrator |
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nsteps = 10000 ; |
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dt = 0.0005 ; in ps |
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; Output control |
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nstxout = 500 ; save coordinates every 1.0 ps |
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nstvout = 500 ; save velocities every 1.0 ps |
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nstenergy = 500 ; save energies every 1.0 ps |
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nstlog = 500 ; update log file every 1.0 ps |
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; Bond parameters |
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continuation = yes ; if no => first dynamics run |
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; Neighborsearching |
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cutoff-scheme = Verlet |
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ns_type = grid ; search neighboring grid cells |
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nstlist = 10 ; 20 fs, largely irrelevant with Verlet scheme |
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rcoulomb = 0.7113990804113833 ; short-range electrostatic cutoff (in nm) |
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rvdw = 0.7113990804113833 ; short-range van der Waals cutoff (in nm) |
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; Electrostatics |
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coulombtype = PME ; Particle Mesh Ewald for long-range electrostatics |
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pme_order = 4 ; cubic interpolation |
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fourierspacing = 0.16 ; grid spacing for FFT |
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; Temperature coupling is off |
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tcoupl = no ; modified Berendsen thermostat |
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; Pressure coupling is off in NVE simulation |
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pcoupl = no ; Pressure coupling on in NPT |
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; Periodic boundary conditions |
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pbc = xyz ; 3-D PBC |
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; Dispersion correction |
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DispCorr = EnerPres ; account for cut-off vdW scheme |
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; Velocity generation |
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gen_vel = no ; Velocity generation is off |
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