A series of Python3 script to lower the barrier of computing and simulating molecular and material systems.
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407 lines
27 KiB

system
404
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101URA H3 308 1.051 1.067 1.665 -1.5822 -0.8644 1.0586
102URA C 309 0.217 1.585 0.231 0.6627 -0.2886 0.4185
102URA O 310 0.231 1.465 0.206 -0.0212 -0.4249 0.2371
102URA N 311 0.275 1.680 0.148 0.4966 -0.1491 -0.6895
102URA N1 312 0.246 1.623 0.360 1.0090 0.0248 -0.1690
102URA H 313 0.338 1.660 0.072 2.1924 2.9388 -0.2754
102URA H1 314 0.267 1.775 0.184 1.2159 -0.7159 1.0862
102URA H2 315 0.212 1.581 0.445 0.0430 -0.0851 -0.6052
102URA H3 316 0.320 1.692 0.369 1.6294 -0.5789 -0.4684
103URA C 317 1.406 0.289 0.138 0.1830 0.0527 0.5427
103URA O 318 1.448 0.403 0.118 -0.1782 0.2971 -0.0852
103URA N 319 1.420 0.235 0.261 0.2644 0.0721 -0.1557
103URA N1 320 1.378 0.207 0.040 0.7288 0.1636 -0.1851
103URA H 321 1.369 0.151 0.287 0.4454 0.1414 0.4439
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103URA H2 323 1.324 0.124 0.061 0.0294 0.4812 -0.6430
103URA H3 324 1.375 0.237 -0.057 -0.8275 -1.2400 -0.6216
104URA C 325 1.073 1.288 0.573 -0.2033 0.1915 -0.4414
104URA O 326 1.050 1.183 0.520 0.0193 0.0392 0.6733
104URA N 327 1.003 1.396 0.530 -0.3408 -0.7506 -0.2316
104URA N1 328 1.120 1.291 0.707 -0.5285 -0.3004 0.5376
104URA H 329 1.063 1.478 0.529 -1.1807 -0.1315 -1.2600
104URA H1 330 0.936 1.391 0.454 -0.7560 1.8498 -0.1342
104URA H2 331 1.135 1.385 0.742 -2.5868 0.8710 -1.4669
104URA H3 332 1.134 1.206 0.759 -0.0139 0.0940 1.0641
105URA C 333 1.148 0.422 0.828 0.2550 0.2836 -0.0506
105URA O 334 1.212 0.334 0.885 -0.1361 0.0485 -0.0782
105URA N 335 1.017 0.392 0.796 -0.3636 0.0375 0.1769
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105URA H 337 0.951 0.464 0.771 -1.8921 -1.2918 0.2448
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105URA H2 339 1.279 0.571 0.871 0.6963 -1.6770 -0.5306
105URA H3 340 1.113 0.625 0.840 0.7178 0.2064 -2.2772
106URA C 341 0.353 0.601 0.650 0.3699 -0.0084 -0.4782
106URA O 342 0.444 0.669 0.696 0.8196 -0.1082 -0.4689
106URA N 343 0.371 0.511 0.549 -0.4884 -0.5214 0.3211
106URA N1 344 0.236 0.588 0.724 -0.3603 0.4174 0.6259
106URA H 345 0.328 0.419 0.557 1.1026 -1.4330 -1.0297
106URA H1 346 0.465 0.511 0.512 0.0476 -1.8382 1.5808
106URA H2 347 0.208 0.660 0.789 0.3845 -1.3767 3.0632
106URA H3 348 0.175 0.513 0.692 -0.5853 0.5600 0.7185
107URA C 349 0.715 1.319 0.707 0.2259 0.2319 0.3996
107URA O 350 0.781 1.229 0.662 0.0647 0.1405 0.1940
107URA N 351 0.772 1.443 0.716 0.2243 -0.0957 -0.2087
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107URA H 353 0.869 1.461 0.738 0.9211 0.4312 -3.1718
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108URA C 357 0.370 1.530 1.372 -0.2147 0.5102 0.3457
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108URA N 359 0.472 1.433 1.381 -1.0163 -0.2686 0.5039
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108URA H2 363 0.290 1.459 1.547 -0.4451 -0.1051 0.1115
108URA H3 364 0.254 1.631 1.509 2.1984 1.0090 -0.7758
109URA C 365 1.283 0.950 0.305 -0.3541 -0.5064 -0.0044
109URA O 366 1.228 1.011 0.212 -0.8582 0.3405 -0.1269
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109URA N1 368 1.360 0.840 0.278 -0.0668 0.3900 -0.8395
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109URA H1 370 1.354 1.130 0.409 0.0901 -0.2943 1.3088
109URA H2 371 1.349 0.802 0.185 -0.9798 -0.8108 -0.2660
109URA H3 372 1.418 0.790 0.345 -0.9775 -1.4354 -1.3435
110URA C 373 1.372 0.800 1.287 -0.2143 0.6357 0.4104
110URA O 374 1.312 0.901 1.260 0.2246 -0.3347 0.8551
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110URA H 377 1.199 0.676 1.282 -0.2990 -2.3093 0.5795
110URA H1 378 1.358 0.601 1.313 -0.7588 0.1592 1.5081
110URA H2 379 1.559 0.874 1.269 0.7354 -0.2333 -2.8811
110URA H3 380 1.550 0.701 1.305 -0.3966 -1.2917 -1.5639
111URA C 381 0.275 1.120 1.326 0.5616 0.5738 -0.1880
111URA O 382 0.231 1.003 1.333 0.5129 0.3466 -0.4642
111URA N 383 0.396 1.147 1.383 -0.2619 -0.1984 0.1075
111URA N1 384 0.178 1.214 1.331 -0.0276 0.2031 0.7369
111URA H 385 0.440 1.234 1.356 0.1174 -0.0009 1.3273
111URA H1 386 0.444 1.091 1.452 -0.0341 0.4363 0.4763
111URA H2 387 0.084 1.187 1.356 -1.9017 3.1675 -2.2967
111URA H3 388 0.207 1.302 1.373 -1.1803 0.4332 1.0875
112URA C 389 1.187 0.671 0.535 0.5074 -0.3318 -0.0162
112URA O 390 1.260 0.753 0.591 0.2056 0.1168 0.2518
112URA N 391 1.061 0.710 0.487 -0.2898 -0.3490 0.1816
112URA N1 392 1.244 0.578 0.453 -0.2985 0.2997 0.5757
112URA H 393 1.048 0.806 0.455 -0.2645 0.2546 1.8846
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112URA H2 395 1.195 0.515 0.390 1.1268 -0.4552 0.1924
112URA H3 396 1.344 0.567 0.456 -0.3351 -0.6010 -0.6117
113URA C 397 1.551 1.137 0.754 0.3728 1.2113 0.4130
113URA O 398 1.673 1.138 0.760 0.4830 -0.0422 0.1989
113URA N 399 1.486 1.014 0.777 -0.0825 0.3621 0.0796
113URA N1 400 1.493 1.219 0.654 -0.4069 0.1890 0.2794
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113URA H2 403 1.413 1.181 0.604 1.0092 1.1549 -3.0095
113URA H3 404 1.557 1.281 0.605 1.0733 -0.6395 1.1018
1.60651 1.60651 1.60651