main
Aditya Wibawa Sakti 1 year ago
parent c895649a55
commit 54e5e463a3
  1. 28
      install.sh
  2. BIN
      lib/__pycache__/cmmde_dcdftb.cpython-310.pyc
  3. BIN
      lib/__pycache__/cmmde_dftb.cpython-310.pyc
  4. BIN
      lib/__pycache__/cmmde_dock.cpython-310.pyc
  5. BIN
      lib/__pycache__/cmmde_hubbard.cpython-310.pyc
  6. BIN
      lib/__pycache__/cmmde_mass.cpython-310.pyc
  7. BIN
      lib/__pycache__/cmmde_mdpro.cpython-310.pyc
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      lib/__pycache__/cmmde_nw.cpython-310.pyc
  9. BIN
      lib/__pycache__/cmmde_orca.cpython-310.pyc
  10. BIN
      lib/__pycache__/cmmde_qe.cpython-310.pyc
  11. BIN
      lib/__pycache__/cmmde_xtb.cpython-310.pyc

@ -9,28 +9,28 @@ sudo apt install -y cmake
sudo apt install -y libblas-dev sudo apt install -y libblas-dev
sudo apt install -y libarpack2-dev sudo apt install -y libarpack2-dev
sudo apt install -y openbabel sudo apt install -y openbabel
# Make the bashrc # Make the zshrc
## Merging the Python libraries of CMMDE ## Merging the Python libraries of CMMDE
echo "export PYTHONPATH=`pwd`/lib:$PYTHONPATH" >> ~/.bashrc echo "export PYTHONPATH=`pwd`/lib:$PYTHONPATH" >> ~/.zshrc
## Merging the CMMDE binaries to your PATH ## Merging the CMMDE binaries to your PATH
echo "export PATH=`pwd`/bin:$PATH" >> ~/.bashrc echo "export PATH=`pwd`/bin:$PATH" >> ~/.zshrc
echo "export ORCA_COMMAND=/opt/orca/orca" >> ~/.bashrc echo "export ORCA_COMMAND=/opt/orca/orca" >> ~/.zshrc
echo "export XTB_COMMAND=/usr/local/bin/xtb" >> ~/.bashrc echo "export XTB_COMMAND=/usr/local/bin/xtb" >> ~/.zshrc
## PATH to DCDFTBMD program, please refer the README.md to register the program at Nakai Lab of Waseda University ## PATH to DCDFTBMD program, please refer the README.md to register the program at Nakai Lab of Waseda University
## Aktifkan baris di bawah jika anda sudah menginstall DCDFTBMD ## Aktifkan baris di bawah jika anda sudah menginstall DCDFTBMD
#echo "export DCDFTB_COMMAND=/path/to/DCDFTBMD/bin/binary" >> ~/.bashrc #echo "export DCDFTB_COMMAND=/path/to/DCDFTBMD/bin/binary" >> ~/.zshrc
# If you have GROMACS # If you have GROMACS
#echo "export GROMACS_COMMAND=`pwd`/lib/cmmde_solution.py" >> ~/.bashrc #echo "export GROMACS_COMMAND=`pwd`/lib/cmmde_solution.py" >> ~/.zshrc
#echo "export GROMACS_DIR=/path/to/gromacs/build/bin" >> ~/.bashrc #echo "export GROMACS_DIR=/path/to/gromacs/build/bin" >> ~/.zshrc
#echo "alias gmx='path/to/gromacs/bin/gmx'" >> ~/.bashrc #echo "alias gmx='path/to/gromacs/bin/gmx'" >> ~/.zshrc
#echo "export GROMACS_FF=/path/to/gromacs/source/share/top" #echo "export GROMACS_FF=/path/to/gromacs/source/share/top"
#echo "export AMBER_FF=/path/to/miniconda/dat/leap/cmd" #echo "export AMBER_FF=/path/to/miniconda/dat/leap/cmd"
#echo "export DFTB_COMMAND=/path/to/dftb+/bin/dftb+" #echo "export DFTB_COMMAND=/path/to/dftb+/bin/dftb+"
#echo "export DPTOOLS_DIR=/path/to/dftbplus/tools/dptools/bin" #echo "export DPTOOLS_DIR=/path/to/dftbplus/tools/dptools/bin"
# If you have DOCK6 # If you have DOCK6
#echo "export DMS_COMMAND=/usr/local/bin/dms" >> ~/.bashrc #echo "export DMS_COMMAND=/usr/local/bin/dms" >> ~/.zshrc
#echo "export DOCK_DIR=/path/to/dock6/bin" >> ~/.bashrc #echo "export DOCK_DIR=/path/to/dock6/bin" >> ~/.zshrc
#echo "export DOCK_PARM=/path/to/dock6/parameters" >> ~/.bashrc #echo "export DOCK_PARM=/path/to/dock6/parameters" >> ~/.zshrc
## Pada kasus-kasus tertentu, source ~/.bashrc akan perlu dilakukan secara manual jika cmmde.py tidak terdeteksi di $PATH ## Pada kasus-kasus tertentu, source ~/.zshrc akan perlu dilakukan secara manual jika cmmde.py tidak terdeteksi di $PATH
source ~/.bashrc source ~/.zshrc

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