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PoissonSolver3DCylindricalGPU
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rifki sadikin 6 years ago
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  1. 52
      PETUNJUKPENGGUNAAN.md
  2. 14020
      example/external/catch2/catch.hpp
  3. 62
      example/external/catch2/catch_reporter_automake.hpp
  4. 253
      example/external/catch2/catch_reporter_tap.hpp
  5. 220
      example/external/catch2/catch_reporter_teamcity.hpp
  6. 2
      example/main.cpp
  7. 22
      example/poissonsolver.test.cpp

52
PETUNJUKPENGGUNAAN.md
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# PETUNJUK PENGGUNAAN
# Petunjuk Penggunaan
```
pembuat : Rifki Sadikin (rifki.sadikin@lipi.go.id)
tanggal : 6 November 2018
```
Petunjuk penggunaan ini berisi:
- Cara **membuat** dan **menginstal** Pustaka Pemercepat Komputasi berbasis GPU CUDA untuk Penyelesaian Persamaan *Poisson* dalam Koordinat Silindrikal.
- Cara **memakai** Pustaka Pemercepat Komputasi berbasis GPU CUDA untuk Penyelesaian Persamaan *Poisson* dalam Koordinat Silindrikal dalam C++.
## Struktur Berkas
Struktur berkas pustaka Pemercepat Komputasi berbasis GPU CUDA untuk Penyelesaian Persamaan *Poisson* dalam Koordinat Silindrikal adalah sebagai berikut:
``` bash
|-- CMakeLists.txt
|-- docs
| `-- Doxyfile.in
|-- example
| |-- CMakeLists.txt
| |-- PoissonSolver3DGPUTest.cpp
| `-- PoissonSolver3DGPUTest.h
|-- interface
| |-- PoissonSolver3DCylindricalGPU.cxx
| `-- PoissonSolver3DCylindricalGPU.h
|-- kernel
| |-- PoissonSolver3DGPU.cu
| `-- PoissonSolver3DGPU.h
|-- PETUNJUKPENGGUNAAN.md
`-- README.md
```
## Modul Program yang Dibutuhkan
Untuk menginstall pustaka dibutuhkan program pengembang di lingkungan sistem operasi Linux (saat ini masih di Linux) yaitu:
1. CMAKE versi minimal 3.10.3
2. GCC versi minimal 6.2.0
3. CUDA versi 9.1
Jika disediakan module program pada lingkungan sistem HPC maka dapat menjalankan perintah berikut ini:
```console
module load cmake/3.10.3
module load gcc/6.2.0
module load cuda
```
## Instalasi

14020
example/external/catch2/catch.hpp vendored
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62
example/external/catch2/catch_reporter_automake.hpp vendored
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/*
* Created by Justin R. Wilson on 2/19/2017.
* Copyright 2017 Justin R. Wilson. All rights reserved.
*
* Distributed under the Boost Software License, Version 1.0. (See accompanying
* file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef TWOBLUECUBES_CATCH_REPORTER_AUTOMAKE_HPP_INCLUDED
#define TWOBLUECUBES_CATCH_REPORTER_AUTOMAKE_HPP_INCLUDED
// Don't #include any Catch headers here - we can assume they are already
// included before this header.
// This is not good practice in general but is necessary in this case so this
// file can be distributed as a single header that works with the main
// Catch single header.
namespace Catch {
struct AutomakeReporter : StreamingReporterBase<AutomakeReporter> {
AutomakeReporter( ReporterConfig const& _config )
: StreamingReporterBase( _config )
{}
~AutomakeReporter() override;
static std::string getDescription() {
return "Reports test results in the format of Automake .trs files";
}
void assertionStarting( AssertionInfo const& ) override {}
bool assertionEnded( AssertionStats const& /*_assertionStats*/ ) override { return true; }
void testCaseEnded( TestCaseStats const& _testCaseStats ) override {
// Possible values to emit are PASS, XFAIL, SKIP, FAIL, XPASS and ERROR.
stream << ":test-result: ";
if (_testCaseStats.totals.assertions.allPassed()) {
stream << "PASS";
} else if (_testCaseStats.totals.assertions.allOk()) {
stream << "XFAIL";
} else {
stream << "FAIL";
}
stream << ' ' << _testCaseStats.testInfo.name << '\n';
StreamingReporterBase::testCaseEnded( _testCaseStats );
}
void skipTest( TestCaseInfo const& testInfo ) override {
stream << ":test-result: SKIP " << testInfo.name << '\n';
}
};
#ifdef CATCH_IMPL
AutomakeReporter::~AutomakeReporter() {}
#endif
CATCH_REGISTER_REPORTER( "automake", AutomakeReporter)
} // end namespace Catch
#endif // TWOBLUECUBES_CATCH_REPORTER_AUTOMAKE_HPP_INCLUDED

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example/external/catch2/catch_reporter_tap.hpp vendored
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/*
* Created by Colton Wolkins on 2015-08-15.
* Copyright 2015 Martin Moene. All rights reserved.
*
* Distributed under the Boost Software License, Version 1.0. (See accompanying
* file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef TWOBLUECUBES_CATCH_REPORTER_TAP_HPP_INCLUDED
#define TWOBLUECUBES_CATCH_REPORTER_TAP_HPP_INCLUDED
// Don't #include any Catch headers here - we can assume they are already
// included before this header.
// This is not good practice in general but is necessary in this case so this
// file can be distributed as a single header that works with the main
// Catch single header.
#include <algorithm>
namespace Catch {
struct TAPReporter : StreamingReporterBase<TAPReporter> {
using StreamingReporterBase::StreamingReporterBase;
~TAPReporter() override;
static std::string getDescription() {
return "Reports test results in TAP format, suitable for test harnesses";
}
ReporterPreferences getPreferences() const override {
return m_reporterPrefs;
}
void noMatchingTestCases( std::string const& spec ) override {
stream << "# No test cases matched '" << spec << "'" << std::endl;
}
void assertionStarting( AssertionInfo const& ) override {}
bool assertionEnded( AssertionStats const& _assertionStats ) override {
++counter;
AssertionPrinter printer( stream, _assertionStats, counter );
printer.print();
stream << " # " << currentTestCaseInfo->name ;
stream << std::endl;
return true;
}
void testRunEnded( TestRunStats const& _testRunStats ) override {
printTotals( _testRunStats.totals );
stream << "\n" << std::endl;
StreamingReporterBase::testRunEnded( _testRunStats );
}
private:
std::size_t counter = 0;
class AssertionPrinter {
public:
AssertionPrinter& operator= ( AssertionPrinter const& ) = delete;
AssertionPrinter( AssertionPrinter const& ) = delete;
AssertionPrinter( std::ostream& _stream, AssertionStats const& _stats, std::size_t _counter )
: stream( _stream )
, result( _stats.assertionResult )
, messages( _stats.infoMessages )
, itMessage( _stats.infoMessages.begin() )
, printInfoMessages( true )
, counter(_counter)
{}
void print() {
itMessage = messages.begin();
switch( result.getResultType() ) {
case ResultWas::Ok:
printResultType( passedString() );
printOriginalExpression();
printReconstructedExpression();
if ( ! result.hasExpression() )
printRemainingMessages( Colour::None );
else
printRemainingMessages();
break;
case ResultWas::ExpressionFailed:
if (result.isOk()) {
printResultType(passedString());
} else {
printResultType(failedString());
}
printOriginalExpression();
printReconstructedExpression();
if (result.isOk()) {
printIssue(" # TODO");
}
printRemainingMessages();
break;
case ResultWas::ThrewException:
printResultType( failedString() );
printIssue( "unexpected exception with message:" );
printMessage();
printExpressionWas();
printRemainingMessages();
break;
case ResultWas::FatalErrorCondition:
printResultType( failedString() );
printIssue( "fatal error condition with message:" );
printMessage();
printExpressionWas();
printRemainingMessages();
break;
case ResultWas::DidntThrowException:
printResultType( failedString() );
printIssue( "expected exception, got none" );
printExpressionWas();
printRemainingMessages();
break;
case ResultWas::Info:
printResultType( "info" );
printMessage();
printRemainingMessages();
break;
case ResultWas::Warning:
printResultType( "warning" );
printMessage();
printRemainingMessages();
break;
case ResultWas::ExplicitFailure:
printResultType( failedString() );
printIssue( "explicitly" );
printRemainingMessages( Colour::None );
break;
// These cases are here to prevent compiler warnings
case ResultWas::Unknown:
case ResultWas::FailureBit:
case ResultWas::Exception:
printResultType( "** internal error **" );
break;
}
}
private:
static Colour::Code dimColour() { return Colour::FileName; }
static const char* failedString() { return "not ok"; }
static const char* passedString() { return "ok"; }
void printSourceInfo() const {
Colour colourGuard( dimColour() );
stream << result.getSourceInfo() << ":";
}
void printResultType( std::string const& passOrFail ) const {
if( !passOrFail.empty() ) {
stream << passOrFail << ' ' << counter << " -";
}
}
void printIssue( std::string const& issue ) const {
stream << " " << issue;
}
void printExpressionWas() {
if( result.hasExpression() ) {
stream << ";";
{
Colour colour( dimColour() );
stream << " expression was:";
}
printOriginalExpression();
}
}
void printOriginalExpression() const {
if( result.hasExpression() ) {
stream << " " << result.getExpression();
}
}
void printReconstructedExpression() const {
if( result.hasExpandedExpression() ) {
{
Colour colour( dimColour() );
stream << " for: ";
}
std::string expr = result.getExpandedExpression();
std::replace( expr.begin(), expr.end(), '\n', ' ');
stream << expr;
}
}
void printMessage() {
if ( itMessage != messages.end() ) {
stream << " '" << itMessage->message << "'";
++itMessage;
}
}
void printRemainingMessages( Colour::Code colour = dimColour() ) {
if (itMessage == messages.end()) {
return;
}
// using messages.end() directly (or auto) yields compilation error:
std::vector<MessageInfo>::const_iterator itEnd = messages.end();
const std::size_t N = static_cast<std::size_t>( std::distance( itMessage, itEnd ) );
{
Colour colourGuard( colour );
stream << " with " << pluralise( N, "message" ) << ":";
}
for(; itMessage != itEnd; ) {
// If this assertion is a warning ignore any INFO messages
if( printInfoMessages || itMessage->type != ResultWas::Info ) {
stream << " '" << itMessage->message << "'";
if ( ++itMessage != itEnd ) {
Colour colourGuard( dimColour() );
stream << " and";
}
}
}
}
private:
std::ostream& stream;
AssertionResult const& result;
std::vector<MessageInfo> messages;
std::vector<MessageInfo>::const_iterator itMessage;
bool printInfoMessages;
std::size_t counter;
};
void printTotals( const Totals& totals ) const {
if( totals.testCases.total() == 0 ) {
stream << "1..0 # Skipped: No tests ran.";
} else {
stream << "1.." << counter;
}
}
};
#ifdef CATCH_IMPL
TAPReporter::~TAPReporter() {}
#endif
CATCH_REGISTER_REPORTER( "tap", TAPReporter )
} // end namespace Catch
#endif // TWOBLUECUBES_CATCH_REPORTER_TAP_HPP_INCLUDED

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example/external/catch2/catch_reporter_teamcity.hpp vendored
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/*
* Created by Phil Nash on 19th December 2014
* Copyright 2014 Two Blue Cubes Ltd. All rights reserved.
*
* Distributed under the Boost Software License, Version 1.0. (See accompanying
* file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef TWOBLUECUBES_CATCH_REPORTER_TEAMCITY_HPP_INCLUDED
#define TWOBLUECUBES_CATCH_REPORTER_TEAMCITY_HPP_INCLUDED
// Don't #include any Catch headers here - we can assume they are already
// included before this header.
// This is not good practice in general but is necessary in this case so this
// file can be distributed as a single header that works with the main
// Catch single header.
#include <cstring>
#ifdef __clang__
# pragma clang diagnostic push
# pragma clang diagnostic ignored "-Wpadded"
#endif
namespace Catch {
struct TeamCityReporter : StreamingReporterBase<TeamCityReporter> {
TeamCityReporter( ReporterConfig const& _config )
: StreamingReporterBase( _config )
{
m_reporterPrefs.shouldRedirectStdOut = true;
}
static std::string escape( std::string const& str ) {
std::string escaped = str;
replaceInPlace( escaped, "|", "||" );
replaceInPlace( escaped, "'", "|'" );
replaceInPlace( escaped, "\n", "|n" );
replaceInPlace( escaped, "\r", "|r" );
replaceInPlace( escaped, "[", "|[" );
replaceInPlace( escaped, "]", "|]" );
return escaped;
}
~TeamCityReporter() override;
static std::string getDescription() {
return "Reports test results as TeamCity service messages";
}
void skipTest( TestCaseInfo const& /* testInfo */ ) override {
}
void noMatchingTestCases( std::string const& /* spec */ ) override {}
void testGroupStarting( GroupInfo const& groupInfo ) override {
StreamingReporterBase::testGroupStarting( groupInfo );
stream << "##teamcity[testSuiteStarted name='"
<< escape( groupInfo.name ) << "']\n";
}
void testGroupEnded( TestGroupStats const& testGroupStats ) override {
StreamingReporterBase::testGroupEnded( testGroupStats );
stream << "##teamcity[testSuiteFinished name='"
<< escape( testGroupStats.groupInfo.name ) << "']\n";
}
void assertionStarting( AssertionInfo const& ) override {}
bool assertionEnded( AssertionStats const& assertionStats ) override {
AssertionResult const& result = assertionStats.assertionResult;
if( !result.isOk() ) {
ReusableStringStream msg;
if( !m_headerPrintedForThisSection )
printSectionHeader( msg.get() );
m_headerPrintedForThisSection = true;
msg << result.getSourceInfo() << "\n";
switch( result.getResultType() ) {
case ResultWas::ExpressionFailed:
msg << "expression failed";
break;
case ResultWas::ThrewException:
msg << "unexpected exception";
break;
case ResultWas::FatalErrorCondition:
msg << "fatal error condition";
break;
case ResultWas::DidntThrowException:
msg << "no exception was thrown where one was expected";
break;
case ResultWas::ExplicitFailure:
msg << "explicit failure";
break;
// We shouldn't get here because of the isOk() test
case ResultWas::Ok:
case ResultWas::Info:
case ResultWas::Warning:
CATCH_ERROR( "Internal error in TeamCity reporter" );
// These cases are here to prevent compiler warnings
case ResultWas::Unknown:
case ResultWas::FailureBit:
case ResultWas::Exception:
CATCH_ERROR( "Not implemented" );
}
if( assertionStats.infoMessages.size() == 1 )
msg << " with message:";
if( assertionStats.infoMessages.size() > 1 )
msg << " with messages:";
for( auto const& messageInfo : assertionStats.infoMessages )
msg << "\n \"" << messageInfo.message << "\"";
if( result.hasExpression() ) {
msg <<
"\n " << result.getExpressionInMacro() << "\n"
"with expansion:\n" <<
" " << result.getExpandedExpression() << "\n";
}
if( currentTestCaseInfo->okToFail() ) {
msg << "- failure ignore as test marked as 'ok to fail'\n";
stream << "##teamcity[testIgnored"
<< " name='" << escape( currentTestCaseInfo->name )<< "'"
<< " message='" << escape( msg.str() ) << "'"
<< "]\n";
}
else {
stream << "##teamcity[testFailed"
<< " name='" << escape( currentTestCaseInfo->name )<< "'"
<< " message='" << escape( msg.str() ) << "'"
<< "]\n";
}
}
stream.flush();
return true;
}
void sectionStarting( SectionInfo const& sectionInfo ) override {
m_headerPrintedForThisSection = false;
StreamingReporterBase::sectionStarting( sectionInfo );
}
void testCaseStarting( TestCaseInfo const& testInfo ) override {
m_testTimer.start();
StreamingReporterBase::testCaseStarting( testInfo );
stream << "##teamcity[testStarted name='"
<< escape( testInfo.name ) << "']\n";
stream.flush();
}
void testCaseEnded( TestCaseStats const& testCaseStats ) override {
StreamingReporterBase::testCaseEnded( testCaseStats );
if( !testCaseStats.stdOut.empty() )
stream << "##teamcity[testStdOut name='"
<< escape( testCaseStats.testInfo.name )
<< "' out='" << escape( testCaseStats.stdOut ) << "']\n";
if( !testCaseStats.stdErr.empty() )
stream << "##teamcity[testStdErr name='"
<< escape( testCaseStats.testInfo.name )
<< "' out='" << escape( testCaseStats.stdErr ) << "']\n";
stream << "##teamcity[testFinished name='"
<< escape( testCaseStats.testInfo.name ) << "' duration='"
<< m_testTimer.getElapsedMilliseconds() << "']\n";
stream.flush();
}
private:
void printSectionHeader( std::ostream& os ) {
assert( !m_sectionStack.empty() );
if( m_sectionStack.size() > 1 ) {
os << getLineOfChars<'-'>() << "\n";
std::vector<SectionInfo>::const_iterator
it = m_sectionStack.begin()+1, // Skip first section (test case)
itEnd = m_sectionStack.end();
for( ; it != itEnd; ++it )
printHeaderString( os, it->name );
os << getLineOfChars<'-'>() << "\n";
}
SourceLineInfo lineInfo = m_sectionStack.front().lineInfo;
if( !lineInfo.empty() )
os << lineInfo << "\n";
os << getLineOfChars<'.'>() << "\n\n";
}
// if string has a : in first line will set indent to follow it on
// subsequent lines
static void printHeaderString( std::ostream& os, std::string const& _string, std::size_t indent = 0 ) {
std::size_t i = _string.find( ": " );
if( i != std::string::npos )
i+=2;
else
i = 0;
os << Column( _string )
.indent( indent+i)
.initialIndent( indent ) << "\n";
}
private:
bool m_headerPrintedForThisSection = false;
Timer m_testTimer;
};
#ifdef CATCH_IMPL
TeamCityReporter::~TeamCityReporter() {}
#endif
CATCH_REGISTER_REPORTER( "teamcity", TeamCityReporter )
} // end namespace Catch
#ifdef __clang__
# pragma clang diagnostic pop
#endif
#endif // TWOBLUECUBES_CATCH_REPORTER_TEAMCITY_HPP_INCLUDED

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example/main.cpp
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#define CATCH_CONFIG_MAIN
#include <catch.hpp>

22
example/poissonsolver.test.cpp
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#include <catch.hpp>
#include "PoissonSolver3DGPUTest.h"
TEST_CASE( "INFO and WARN do not abort tests", "[messages][.]" ) {
INFO( "this is a " << "message" ); // This should output the message if a failure occurs
WARN( "this is a " << "warning" ); // This should always output the message but then continue
}
TEST_CASE( "SUCCEED counts as a test pass", "[messages]" ) {
SUCCEED( "this is a " << "success" );
}
TEST_CASE( "Correctness for Poisson Solver ", "[classic]" ) {
INFO( "this message should be logged" );
INFO( "so should this" );
DoPoissonSolverExperiment(17, 17, 18, 200, 0);
REQUIRE( 1== 1 );
}
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