rifki sadikin
6 years ago
parent
083e851673
commit
bd8c4912f8
7 changed files with 52 additions and 14579 deletions
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# PETUNJUK PENGGUNAAN |
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# Petunjuk Penggunaan |
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``` |
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pembuat : Rifki Sadikin (rifki.sadikin@lipi.go.id) |
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tanggal : 6 November 2018 |
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``` |
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Petunjuk penggunaan ini berisi: |
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- Cara **membuat** dan **menginstal** Pustaka Pemercepat Komputasi berbasis GPU CUDA untuk Penyelesaian Persamaan *Poisson* dalam Koordinat Silindrikal. |
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- Cara **memakai** Pustaka Pemercepat Komputasi berbasis GPU CUDA untuk Penyelesaian Persamaan *Poisson* dalam Koordinat Silindrikal dalam C++. |
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## Struktur Berkas |
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Struktur berkas pustaka Pemercepat Komputasi berbasis GPU CUDA untuk Penyelesaian Persamaan *Poisson* dalam Koordinat Silindrikal adalah sebagai berikut: |
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``` bash |
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|-- CMakeLists.txt |
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|-- docs |
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| `-- Doxyfile.in |
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|-- example |
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| |-- CMakeLists.txt |
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| |-- PoissonSolver3DGPUTest.cpp |
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| `-- PoissonSolver3DGPUTest.h |
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|-- interface |
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| |-- PoissonSolver3DCylindricalGPU.cxx |
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| `-- PoissonSolver3DCylindricalGPU.h |
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|-- kernel |
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| |-- PoissonSolver3DGPU.cu |
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| `-- PoissonSolver3DGPU.h |
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|-- PETUNJUKPENGGUNAAN.md |
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`-- README.md |
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``` |
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## Modul Program yang Dibutuhkan |
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Untuk menginstall pustaka dibutuhkan program pengembang di lingkungan sistem operasi Linux (saat ini masih di Linux) yaitu: |
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1. CMAKE versi minimal 3.10.3 |
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2. GCC versi minimal 6.2.0 |
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3. CUDA versi 9.1 |
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Jika disediakan module program pada lingkungan sistem HPC maka dapat menjalankan perintah berikut ini: |
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```console |
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module load cmake/3.10.3 |
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module load gcc/6.2.0 |
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module load cuda |
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``` |
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## Instalasi |
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Load Diff
@ -1,62 +0,0 @@ |
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/*
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* Created by Justin R. Wilson on 2/19/2017. |
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* Copyright 2017 Justin R. Wilson. All rights reserved. |
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* |
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* Distributed under the Boost Software License, Version 1.0. (See accompanying |
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* file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
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*/ |
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#ifndef TWOBLUECUBES_CATCH_REPORTER_AUTOMAKE_HPP_INCLUDED |
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#define TWOBLUECUBES_CATCH_REPORTER_AUTOMAKE_HPP_INCLUDED |
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// Don't #include any Catch headers here - we can assume they are already
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// included before this header.
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// This is not good practice in general but is necessary in this case so this
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// file can be distributed as a single header that works with the main
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// Catch single header.
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namespace Catch { |
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struct AutomakeReporter : StreamingReporterBase<AutomakeReporter> { |
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AutomakeReporter( ReporterConfig const& _config ) |
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: StreamingReporterBase( _config ) |
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{} |
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~AutomakeReporter() override; |
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static std::string getDescription() { |
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return "Reports test results in the format of Automake .trs files"; |
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} |
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void assertionStarting( AssertionInfo const& ) override {} |
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bool assertionEnded( AssertionStats const& /*_assertionStats*/ ) override { return true; } |
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void testCaseEnded( TestCaseStats const& _testCaseStats ) override { |
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// Possible values to emit are PASS, XFAIL, SKIP, FAIL, XPASS and ERROR.
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stream << ":test-result: "; |
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if (_testCaseStats.totals.assertions.allPassed()) { |
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stream << "PASS"; |
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} else if (_testCaseStats.totals.assertions.allOk()) { |
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stream << "XFAIL"; |
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} else { |
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stream << "FAIL"; |
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} |
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stream << ' ' << _testCaseStats.testInfo.name << '\n'; |
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StreamingReporterBase::testCaseEnded( _testCaseStats ); |
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} |
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void skipTest( TestCaseInfo const& testInfo ) override { |
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stream << ":test-result: SKIP " << testInfo.name << '\n'; |
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} |
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}; |
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#ifdef CATCH_IMPL |
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AutomakeReporter::~AutomakeReporter() {} |
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#endif |
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CATCH_REGISTER_REPORTER( "automake", AutomakeReporter) |
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} // end namespace Catch
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#endif // TWOBLUECUBES_CATCH_REPORTER_AUTOMAKE_HPP_INCLUDED
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@ -1,253 +0,0 @@ |
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/*
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* Created by Colton Wolkins on 2015-08-15. |
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* Copyright 2015 Martin Moene. All rights reserved. |
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* |
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* Distributed under the Boost Software License, Version 1.0. (See accompanying |
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* file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
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*/ |
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#ifndef TWOBLUECUBES_CATCH_REPORTER_TAP_HPP_INCLUDED |
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#define TWOBLUECUBES_CATCH_REPORTER_TAP_HPP_INCLUDED |
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// Don't #include any Catch headers here - we can assume they are already
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// included before this header.
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// This is not good practice in general but is necessary in this case so this
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// file can be distributed as a single header that works with the main
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// Catch single header.
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#include <algorithm> |
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namespace Catch { |
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struct TAPReporter : StreamingReporterBase<TAPReporter> { |
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using StreamingReporterBase::StreamingReporterBase; |
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~TAPReporter() override; |
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static std::string getDescription() { |
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return "Reports test results in TAP format, suitable for test harnesses"; |
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} |
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ReporterPreferences getPreferences() const override { |
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return m_reporterPrefs; |
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} |
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void noMatchingTestCases( std::string const& spec ) override { |
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stream << "# No test cases matched '" << spec << "'" << std::endl; |
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} |
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void assertionStarting( AssertionInfo const& ) override {} |
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bool assertionEnded( AssertionStats const& _assertionStats ) override { |
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++counter; |
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AssertionPrinter printer( stream, _assertionStats, counter ); |
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printer.print(); |
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stream << " # " << currentTestCaseInfo->name ; |
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stream << std::endl; |
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return true; |
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} |
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void testRunEnded( TestRunStats const& _testRunStats ) override { |
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printTotals( _testRunStats.totals ); |
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stream << "\n" << std::endl; |
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StreamingReporterBase::testRunEnded( _testRunStats ); |
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} |
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private: |
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std::size_t counter = 0; |
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class AssertionPrinter { |
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public: |
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AssertionPrinter& operator= ( AssertionPrinter const& ) = delete; |
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AssertionPrinter( AssertionPrinter const& ) = delete; |
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AssertionPrinter( std::ostream& _stream, AssertionStats const& _stats, std::size_t _counter ) |
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: stream( _stream ) |
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, result( _stats.assertionResult ) |
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, messages( _stats.infoMessages ) |
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, itMessage( _stats.infoMessages.begin() ) |
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, printInfoMessages( true ) |
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, counter(_counter) |
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{} |
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void print() { |
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itMessage = messages.begin(); |
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switch( result.getResultType() ) { |
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case ResultWas::Ok: |
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printResultType( passedString() ); |
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printOriginalExpression(); |
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printReconstructedExpression(); |
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if ( ! result.hasExpression() ) |
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printRemainingMessages( Colour::None ); |
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else |
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printRemainingMessages(); |
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break; |
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case ResultWas::ExpressionFailed: |
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if (result.isOk()) { |
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printResultType(passedString()); |
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} else { |
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printResultType(failedString()); |
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} |
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printOriginalExpression(); |
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printReconstructedExpression(); |
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if (result.isOk()) { |
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printIssue(" # TODO"); |
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} |
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printRemainingMessages(); |
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break; |
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case ResultWas::ThrewException: |
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printResultType( failedString() ); |
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printIssue( "unexpected exception with message:" ); |
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printMessage(); |
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printExpressionWas(); |
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printRemainingMessages(); |
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break; |
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case ResultWas::FatalErrorCondition: |
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printResultType( failedString() ); |
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printIssue( "fatal error condition with message:" ); |
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printMessage(); |
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printExpressionWas(); |
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printRemainingMessages(); |
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break; |
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case ResultWas::DidntThrowException: |
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printResultType( failedString() ); |
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printIssue( "expected exception, got none" ); |
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printExpressionWas(); |
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printRemainingMessages(); |
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break; |
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case ResultWas::Info: |
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printResultType( "info" ); |
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printMessage(); |
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printRemainingMessages(); |
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break; |
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case ResultWas::Warning: |
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printResultType( "warning" ); |
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printMessage(); |
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printRemainingMessages(); |
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break; |
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case ResultWas::ExplicitFailure: |
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printResultType( failedString() ); |
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printIssue( "explicitly" ); |
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printRemainingMessages( Colour::None ); |
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break; |
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// These cases are here to prevent compiler warnings
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case ResultWas::Unknown: |
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case ResultWas::FailureBit: |
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case ResultWas::Exception: |
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printResultType( "** internal error **" ); |
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break; |
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} |
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} |
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private: |
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static Colour::Code dimColour() { return Colour::FileName; } |
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static const char* failedString() { return "not ok"; } |
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static const char* passedString() { return "ok"; } |
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void printSourceInfo() const { |
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Colour colourGuard( dimColour() ); |
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stream << result.getSourceInfo() << ":"; |
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} |
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void printResultType( std::string const& passOrFail ) const { |
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if( !passOrFail.empty() ) { |
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stream << passOrFail << ' ' << counter << " -"; |
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} |
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} |
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void printIssue( std::string const& issue ) const { |
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stream << " " << issue; |
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} |
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void printExpressionWas() { |
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if( result.hasExpression() ) { |
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stream << ";"; |
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{ |
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Colour colour( dimColour() ); |
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stream << " expression was:"; |
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} |
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printOriginalExpression(); |
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} |
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} |
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void printOriginalExpression() const { |
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if( result.hasExpression() ) { |
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stream << " " << result.getExpression(); |
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} |
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} |
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void printReconstructedExpression() const { |
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if( result.hasExpandedExpression() ) { |
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{ |
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Colour colour( dimColour() ); |
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stream << " for: "; |
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} |
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std::string expr = result.getExpandedExpression(); |
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std::replace( expr.begin(), expr.end(), '\n', ' '); |
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stream << expr; |
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} |
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} |
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void printMessage() { |
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if ( itMessage != messages.end() ) { |
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stream << " '" << itMessage->message << "'"; |
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++itMessage; |
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} |
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} |
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void printRemainingMessages( Colour::Code colour = dimColour() ) { |
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if (itMessage == messages.end()) { |
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return; |
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} |
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// using messages.end() directly (or auto) yields compilation error:
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std::vector<MessageInfo>::const_iterator itEnd = messages.end(); |
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const std::size_t N = static_cast<std::size_t>( std::distance( itMessage, itEnd ) ); |
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{ |
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Colour colourGuard( colour ); |
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stream << " with " << pluralise( N, "message" ) << ":"; |
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} |
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for(; itMessage != itEnd; ) { |
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// If this assertion is a warning ignore any INFO messages
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if( printInfoMessages || itMessage->type != ResultWas::Info ) { |
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stream << " '" << itMessage->message << "'"; |
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if ( ++itMessage != itEnd ) { |
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Colour colourGuard( dimColour() ); |
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stream << " and"; |
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} |
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} |
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} |
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} |
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private: |
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std::ostream& stream; |
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AssertionResult const& result; |
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std::vector<MessageInfo> messages; |
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std::vector<MessageInfo>::const_iterator itMessage; |
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bool printInfoMessages; |
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std::size_t counter; |
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}; |
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void printTotals( const Totals& totals ) const { |
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if( totals.testCases.total() == 0 ) { |
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stream << "1..0 # Skipped: No tests ran."; |
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} else { |
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stream << "1.." << counter; |
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} |
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} |
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}; |
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#ifdef CATCH_IMPL |
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TAPReporter::~TAPReporter() {} |
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#endif |
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CATCH_REGISTER_REPORTER( "tap", TAPReporter ) |
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} // end namespace Catch
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#endif // TWOBLUECUBES_CATCH_REPORTER_TAP_HPP_INCLUDED
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@ -1,220 +0,0 @@ |
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/*
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* Created by Phil Nash on 19th December 2014 |
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* Copyright 2014 Two Blue Cubes Ltd. All rights reserved. |
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* |
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* Distributed under the Boost Software License, Version 1.0. (See accompanying |
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* file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
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*/ |
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#ifndef TWOBLUECUBES_CATCH_REPORTER_TEAMCITY_HPP_INCLUDED |
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#define TWOBLUECUBES_CATCH_REPORTER_TEAMCITY_HPP_INCLUDED |
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// Don't #include any Catch headers here - we can assume they are already
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// included before this header.
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// This is not good practice in general but is necessary in this case so this
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// file can be distributed as a single header that works with the main
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// Catch single header.
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#include <cstring> |
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#ifdef __clang__ |
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# pragma clang diagnostic push |
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# pragma clang diagnostic ignored "-Wpadded" |
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#endif |
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namespace Catch { |
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struct TeamCityReporter : StreamingReporterBase<TeamCityReporter> { |
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TeamCityReporter( ReporterConfig const& _config ) |
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: StreamingReporterBase( _config ) |
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{ |
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m_reporterPrefs.shouldRedirectStdOut = true; |
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} |
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static std::string escape( std::string const& str ) { |
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std::string escaped = str; |
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replaceInPlace( escaped, "|", "||" ); |
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replaceInPlace( escaped, "'", "|'" ); |
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replaceInPlace( escaped, "\n", "|n" ); |
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replaceInPlace( escaped, "\r", "|r" ); |
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replaceInPlace( escaped, "[", "|[" ); |
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replaceInPlace( escaped, "]", "|]" ); |
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return escaped; |
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} |
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~TeamCityReporter() override; |
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static std::string getDescription() { |
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return "Reports test results as TeamCity service messages"; |
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} |
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void skipTest( TestCaseInfo const& /* testInfo */ ) override { |
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} |
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void noMatchingTestCases( std::string const& /* spec */ ) override {} |
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void testGroupStarting( GroupInfo const& groupInfo ) override { |
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StreamingReporterBase::testGroupStarting( groupInfo ); |
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stream << "##teamcity[testSuiteStarted name='" |
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<< escape( groupInfo.name ) << "']\n"; |
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} |
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void testGroupEnded( TestGroupStats const& testGroupStats ) override { |
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StreamingReporterBase::testGroupEnded( testGroupStats ); |
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stream << "##teamcity[testSuiteFinished name='" |
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<< escape( testGroupStats.groupInfo.name ) << "']\n"; |
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} |
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||||||
|
|
||||||
|
|
||||||
void assertionStarting( AssertionInfo const& ) override {} |
|
||||||
|
|
||||||
bool assertionEnded( AssertionStats const& assertionStats ) override { |
|
||||||
AssertionResult const& result = assertionStats.assertionResult; |
|
||||||
if( !result.isOk() ) { |
|
||||||
|
|
||||||
ReusableStringStream msg; |
|
||||||
if( !m_headerPrintedForThisSection ) |
|
||||||
printSectionHeader( msg.get() ); |
|
||||||
m_headerPrintedForThisSection = true; |
|
||||||
|
|
||||||
msg << result.getSourceInfo() << "\n"; |
|
||||||
|
|
||||||
switch( result.getResultType() ) { |
|
||||||
case ResultWas::ExpressionFailed: |
|
||||||
msg << "expression failed"; |
|
||||||
break; |
|
||||||
case ResultWas::ThrewException: |
|
||||||
msg << "unexpected exception"; |
|
||||||
break; |
|
||||||
case ResultWas::FatalErrorCondition: |
|
||||||
msg << "fatal error condition"; |
|
||||||
break; |
|
||||||
case ResultWas::DidntThrowException: |
|
||||||
msg << "no exception was thrown where one was expected"; |
|
||||||
break; |
|
||||||
case ResultWas::ExplicitFailure: |
|
||||||
msg << "explicit failure"; |
|
||||||
break; |
|
||||||
|
|
||||||
// We shouldn't get here because of the isOk() test
|
|
||||||
case ResultWas::Ok: |
|
||||||
case ResultWas::Info: |
|
||||||
case ResultWas::Warning: |
|
||||||
CATCH_ERROR( "Internal error in TeamCity reporter" ); |
|
||||||
// These cases are here to prevent compiler warnings
|
|
||||||
case ResultWas::Unknown: |
|
||||||
case ResultWas::FailureBit: |
|
||||||
case ResultWas::Exception: |
|
||||||
CATCH_ERROR( "Not implemented" ); |
|
||||||
} |
|
||||||
if( assertionStats.infoMessages.size() == 1 ) |
|
||||||
msg << " with message:"; |
|
||||||
if( assertionStats.infoMessages.size() > 1 ) |
|
||||||
msg << " with messages:"; |
|
||||||
for( auto const& messageInfo : assertionStats.infoMessages ) |
|
||||||
msg << "\n \"" << messageInfo.message << "\""; |
|
||||||
|
|
||||||
|
|
||||||
if( result.hasExpression() ) { |
|
||||||
msg << |
|
||||||
"\n " << result.getExpressionInMacro() << "\n" |
|
||||||
"with expansion:\n" << |
|
||||||
" " << result.getExpandedExpression() << "\n"; |
|
||||||
} |
|
||||||
|
|
||||||
if( currentTestCaseInfo->okToFail() ) { |
|
||||||
msg << "- failure ignore as test marked as 'ok to fail'\n"; |
|
||||||
stream << "##teamcity[testIgnored" |
|
||||||
<< " name='" << escape( currentTestCaseInfo->name )<< "'" |
|
||||||
<< " message='" << escape( msg.str() ) << "'" |
|
||||||
<< "]\n"; |
|
||||||
} |
|
||||||
else { |
|
||||||
stream << "##teamcity[testFailed" |
|
||||||
<< " name='" << escape( currentTestCaseInfo->name )<< "'" |
|
||||||
<< " message='" << escape( msg.str() ) << "'" |
|
||||||
<< "]\n"; |
|
||||||
} |
|
||||||
} |
|
||||||
stream.flush(); |
|
||||||
return true; |
|
||||||
} |
|
||||||
|
|
||||||
void sectionStarting( SectionInfo const& sectionInfo ) override { |
|
||||||
m_headerPrintedForThisSection = false; |
|
||||||
StreamingReporterBase::sectionStarting( sectionInfo ); |
|
||||||
} |
|
||||||
|
|
||||||
void testCaseStarting( TestCaseInfo const& testInfo ) override { |
|
||||||
m_testTimer.start(); |
|
||||||
StreamingReporterBase::testCaseStarting( testInfo ); |
|
||||||
stream << "##teamcity[testStarted name='" |
|
||||||
<< escape( testInfo.name ) << "']\n"; |
|
||||||
stream.flush(); |
|
||||||
} |
|
||||||
|
|
||||||
void testCaseEnded( TestCaseStats const& testCaseStats ) override { |
|
||||||
StreamingReporterBase::testCaseEnded( testCaseStats ); |
|
||||||
if( !testCaseStats.stdOut.empty() ) |
|
||||||
stream << "##teamcity[testStdOut name='" |
|
||||||
<< escape( testCaseStats.testInfo.name ) |
|
||||||
<< "' out='" << escape( testCaseStats.stdOut ) << "']\n"; |
|
||||||
if( !testCaseStats.stdErr.empty() ) |
|
||||||
stream << "##teamcity[testStdErr name='" |
|
||||||
<< escape( testCaseStats.testInfo.name ) |
|
||||||
<< "' out='" << escape( testCaseStats.stdErr ) << "']\n"; |
|
||||||
stream << "##teamcity[testFinished name='" |
|
||||||
<< escape( testCaseStats.testInfo.name ) << "' duration='" |
|
||||||
<< m_testTimer.getElapsedMilliseconds() << "']\n"; |
|
||||||
stream.flush(); |
|
||||||
} |
|
||||||
|
|
||||||
private: |
|
||||||
void printSectionHeader( std::ostream& os ) { |
|
||||||
assert( !m_sectionStack.empty() ); |
|
||||||
|
|
||||||
if( m_sectionStack.size() > 1 ) { |
|
||||||
os << getLineOfChars<'-'>() << "\n"; |
|
||||||
|
|
||||||
std::vector<SectionInfo>::const_iterator |
|
||||||
it = m_sectionStack.begin()+1, // Skip first section (test case)
|
|
||||||
itEnd = m_sectionStack.end(); |
|
||||||
for( ; it != itEnd; ++it ) |
|
||||||
printHeaderString( os, it->name ); |
|
||||||
os << getLineOfChars<'-'>() << "\n"; |
|
||||||
} |
|
||||||
|
|
||||||
SourceLineInfo lineInfo = m_sectionStack.front().lineInfo; |
|
||||||
|
|
||||||
if( !lineInfo.empty() ) |
|
||||||
os << lineInfo << "\n"; |
|
||||||
os << getLineOfChars<'.'>() << "\n\n"; |
|
||||||
} |
|
||||||
|
|
||||||
// if string has a : in first line will set indent to follow it on
|
|
||||||
// subsequent lines
|
|
||||||
static void printHeaderString( std::ostream& os, std::string const& _string, std::size_t indent = 0 ) { |
|
||||||
std::size_t i = _string.find( ": " ); |
|
||||||
if( i != std::string::npos ) |
|
||||||
i+=2; |
|
||||||
else |
|
||||||
i = 0; |
|
||||||
os << Column( _string ) |
|
||||||
.indent( indent+i) |
|
||||||
.initialIndent( indent ) << "\n"; |
|
||||||
} |
|
||||||
private: |
|
||||||
bool m_headerPrintedForThisSection = false; |
|
||||||
Timer m_testTimer; |
|
||||||
}; |
|
||||||
|
|
||||||
#ifdef CATCH_IMPL |
|
||||||
TeamCityReporter::~TeamCityReporter() {} |
|
||||||
#endif |
|
||||||
|
|
||||||
CATCH_REGISTER_REPORTER( "teamcity", TeamCityReporter ) |
|
||||||
|
|
||||||
} // end namespace Catch
|
|
||||||
|
|
||||||
#ifdef __clang__ |
|
||||||
# pragma clang diagnostic pop |
|
||||||
#endif |
|
||||||
|
|
||||||
#endif // TWOBLUECUBES_CATCH_REPORTER_TEAMCITY_HPP_INCLUDED
|
|
||||||
@ -1,2 +0,0 @@ |
|||||||
#define CATCH_CONFIG_MAIN |
|
||||||
#include <catch.hpp> |
|
||||||
@ -1,22 +0,0 @@ |
|||||||
#include <catch.hpp> |
|
||||||
#include "PoissonSolver3DGPUTest.h" |
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
TEST_CASE( "INFO and WARN do not abort tests", "[messages][.]" ) { |
|
||||||
INFO( "this is a " << "message" ); // This should output the message if a failure occurs
|
|
||||||
WARN( "this is a " << "warning" ); // This should always output the message but then continue
|
|
||||||
} |
|
||||||
|
|
||||||
TEST_CASE( "SUCCEED counts as a test pass", "[messages]" ) { |
|
||||||
SUCCEED( "this is a " << "success" ); |
|
||||||
} |
|
||||||
|
|
||||||
TEST_CASE( "Correctness for Poisson Solver ", "[classic]" ) { |
|
||||||
|
|
||||||
INFO( "this message should be logged" ); |
|
||||||
INFO( "so should this" ); |
|
||||||
DoPoissonSolverExperiment(17, 17, 18, 200, 0); |
|
||||||
REQUIRE( 1== 1 ); |
|
||||||
} |
|
||||||
Loading…
Reference in new issue